LSD RDF Data Portal

Contents

1. You can access the LSD RDF Data (an RDFized version of Life Science Dictionary).
   • SPARQL Endpoint: https://lsd.dbcls.jp/sparql
   • SPARQL Explorer
   • Faceted Search
   • LSD RDF Vocabulary
   • RDF Data (English vocabulary) (Relationship between English vocabulary and Japanese vocabulary) (Co-occurrence relation about MeSH terms)
   
   
2. You can download the RDF file.
   • Download site

Examples

• SPARQL Queries
  1. Retrieve synonyms of "headache".
     PREFIX lsd: <http://purl.jp/bio/10/lsd/ontology/201209#> PREFIX skos: <http://www.w3.org/2004/02/skos/core#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> SELECT DISTINCT ?SynonymEn ?LabelSynonymEn ?dbpedia WHERE { [] rdfs:label 'headache'@en ; skos:closeMatch ?SynonymEn . ?SynonymEn rdfs:label ?LabelSynonymEn . OPTIONAL{ ?SynonymEn skos:exactMatch ?dbpedia . } FILTER(lang(?LabelSynonymEn) = 'en') } ORDER BY ?LabelSynonymEn Issue Query
     
     
  2. Retrieve MeSH terms which co-occur with that of "Migraine Disorder" and have the top ten it-idf scores.
     PREFIX lsd: <http://purl.jp/bio/10/lsd/ontology/201209#> PREFIX skos: <http://www.w3.org/2004/02/skos/core#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> SELECT DISTINCT ?MeSH ?LabelMeSH ?tfidf WHERE { [] skos:member <http://purl.jp/bio/10/lsd/mesh/D008881> ; skos:member ?MeSH ; lsd:TfIdfValue ?tfidf . ?MeSH rdfs:label ?LabelMeSH . FILTER(<http://purl.jp/bio/10/lsd/mesh/D008881> != ?MeSH) FILTER(lang(?LabelMeSH) = 'en') } ORDER BY DESC(?tfidf) LIMIT 10 Issue Query
     
     

	LSD RDF Data is licensed under a Creative Commons Attribution-NoDerivs 3.0 Unported License by Life Science DIctionary Project.
	This page is licensed under a Creative Commons Attribution 2.1 Japan License by Database Center for Life Science (DBCLS).